Spa_g41127 (RECQSIM)


Aliases : RECQSIM

Description : not classified & original description: none


Gene families : OG0007893 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007893_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g41127

Target Alias Description ECC score Gene Family Method Actions
AT5G27680 RECQSIM RECQ helicase SIM 0.03 OrthoFinder output from all 47 species
Aob_g30518 RECQSIM not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72931.t1 RECQSIM, Aspi01Gene72931 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13465 RECQSIM not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44091 RECQSIM not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031124001 ATKRS-1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Len_g22554 RECQSIM not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_6672g0010 RECQSIM ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g24117 RECQSIM not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29363 RECQSIM not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 133 301
IPR001650 Helicase_C 525 620
IPR032284 RecQ_Zn-bd 632 692
No external refs found!