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  5. Spa_g42784

Spa_g42784


Description : not classified & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g42784

Target Alias Description ECC score Gene Family Method Actions
Als_g12395 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g25292 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene16818.t1 Aspi01Gene16818 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16842.t2 Aspi01Gene16842 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.03G061600.1 Ceric.03G061600 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.14G062500.1 Ceric.14G062500 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.19G035900.1 Ceric.19G035900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g31792 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g25395 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13223 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428610g0020 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_33008g0010 No alias pectin methylesterase 0.08 OrthoFinder output from all 47 species
Msp_g38949 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g05557 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26065 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g26500 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004950 No alias pectin methylesterase & original description: CDS=716-1846 0.01 OrthoFinder output from all 47 species
Sam_g37525 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 1 102
No external refs found!