Spa_g42892

Description : component *(eS17) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001873_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g42892
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00243530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT2G05220	No alias	Ribosomal S17 family protein	0.03	OrthoFinder output from all 47 species
AT3G10610	No alias	Ribosomal S17 family protein	0.02	OrthoFinder output from all 47 species
Aop_g30259	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.34G043500.1	Ceric.34G043500	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cre12.g498250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.02	OrthoFinder output from all 47 species
Msp_g19559	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Msp_g43078	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_2540V3.1	Pp3c11_2540	Ribosomal S17 family protein	0.02	OrthoFinder output from all 47 species
Pp3c7_21140V3.1	Pp3c7_21140	Ribosomal S17 family protein	0.02	OrthoFinder output from all 47 species
Solyc05g055230.2.1	Solyc05g055230	component RPS17 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc10g150146.1.1	Solyc10g150146	component RPS17 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g10597	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g44094	No alias	component *(eS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006596	polyamine biosynthetic process	IEP	HCCA
BP	GO:0006597	spermine biosynthetic process	IEP	HCCA
BP	GO:0008215	spermine metabolic process	IEP	HCCA
BP	GO:0008216	spermidine metabolic process	IEP	HCCA
BP	GO:0008295	spermidine biosynthetic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009309	amine biosynthetic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0042401	biogenic amine biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	121

External Links

No external refs found!

Spa_g42892

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation