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  5. Spa_g43332

Spa_g43332


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g43332

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19093 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene20189.t1 Aspi01Gene20189 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G031400.1 Ceric.05G031400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G076400.1 Ceric.10G076400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.37G019000.1 Ceric.37G019000 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g07472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12393 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31652 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os04g46740.1 LOC_Os04g46740 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Len_g02282 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29036 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Mp1g17560.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Msp_g08120 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g07458 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06428 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29702 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30829 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08747 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05067 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g02095 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37525 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29457 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g38344 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49902 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54581 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20074 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e029074_P001 Zm00001e029074 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e032213_P001 Zm00001e032213 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 73 358
No external refs found!