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  5. Spa_g48002

Spa_g48002


Description : component *(uS12m) of small mitoribosomal-subunit proteome & original description: none


Gene families : OG0008286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g48002

Target Alias Description ECC score Gene Family Method Actions
AT2G07675 No alias Ribosomal protein S12/S23 family protein 0.09 OrthoFinder output from all 47 species
ATMG00980 RPSL2 Ribosomal protein S12/S23 family protein 0.09 OrthoFinder output from all 47 species
Aev_g16236 No alias component *(uS12m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g13504 No alias component *(uS12m) of small mitoribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cba_g12837 No alias component *(uS12m) of small mitoribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ceric.01G057700.1 Ceric.01G057700 not classified & original description: pacid=50591871... 0.04 OrthoFinder output from all 47 species
Ceric.02G004700.1 Ceric.02G004700 not classified & original description: pacid=50584292... 0.04 OrthoFinder output from all 47 species
Ceric.05G043100.1 Ceric.05G043100 not classified & original description: pacid=50578321... 0.04 OrthoFinder output from all 47 species
Ceric.06G028400.1 Ceric.06G028400 not classified & original description: pacid=50620499... 0.1 OrthoFinder output from all 47 species
Ceric.18G054400.1 Ceric.18G054400 not classified & original description: pacid=50621895... 0.05 OrthoFinder output from all 47 species
Dcu_g49424 No alias component *(uS12m) of small mitoribosomal-subunit... 0.14 OrthoFinder output from all 47 species
GSVIVT01002752001 No alias Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris 0.04 OrthoFinder output from all 47 species
LOC_Os12g34062.1 LOC_Os12g34062 component mtRPS12 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Sam_g26624 No alias component *(uS12m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc00g500254.1.1 RPL20, Solyc00g500254 50S ribosomal protein L20, chloroplastic OS=Coffea... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 12 121
No external refs found!