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  5. Spa_g49888

Spa_g49888


Description : component *(SPT20/ADA5) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g49888
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00266960 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT1G72390 No alias CONTAINS InterPro DOMAIN/s: Spt20 family... 0.05 OrthoFinder output from all 47 species
Adi_g035875 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g085780 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Ala_g27769 No alias component *(SPT20/ADA5) of SAGA transcription... 0.02 OrthoFinder output from all 47 species
Als_g02622 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Aob_g34090 No alias component *(SPT20/ADA5) of SAGA transcription... 0.05 OrthoFinder output from all 47 species
Cba_g38242 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Ceric.13G072900.1 Ceric.13G072900 component *(SPT20/ADA5) of SAGA transcription... 0.04 OrthoFinder output from all 47 species
Dac_g38696 No alias component *(SPT20/ADA5) of SAGA transcription... 0.02 OrthoFinder output from all 47 species
GSVIVT01016716001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os10g25200.1 LOC_Os10g25200 component SPT20/ADA5 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Lfl_g13242 No alias component *(SPT20/ADA5) of SAGA transcription... 0.05 OrthoFinder output from all 47 species
Mp2g19910.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Nbi_g32360 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Ore_g37205 No alias component *(SPT20/ADA5) of SAGA transcription... 0.06 OrthoFinder output from all 47 species
Sam_g07983 No alias component *(SPT20/ADA5) of SAGA transcription... 0.02 OrthoFinder output from all 47 species
Solyc06g063010.4.1 Solyc06g063010 component SPT20/ADA5 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR046468 Spt20-like_SEP 29 181
IPR046467 PHL_dom 550 708
No external refs found!