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  5. Spa_g51431

Spa_g51431


Description : Trihelix-type transcription factor & original description: none


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g51431
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00147950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.02 OrthoFinder output from all 47 species
Ala_g36226 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09478 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57836 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14934 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22030 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26683 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72625 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.36G000200.1 Ceric.36G000200 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g08329 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g37295 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03068 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os04g45750.1 LOC_Os04g45750 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Len_g07748 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19098 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19264 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_10433499g0020 AT-GT2, GT2 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
MA_47951g0010 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
MA_79619g0010 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Msp_g10228 AT-GT2, GT2 zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35869 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42672 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60919 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006964 No alias Trihelix-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022074 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g22480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19131 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Tin_g40677 No alias Trihelix-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 326 412
IPR044822 Myb_DNA-bind_4 677 764
No external refs found!