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  5. Spa_g51937

Spa_g51937 (At-RSZ22a, RSZ22a)


Aliases : At-RSZ22a, RSZ22a

Description : not classified & original description: none


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g51937

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154210 At-RSZ22a,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
AT1G23860 RSZ21, At-RSZ21,... RS-containing zinc finger protein 21 0.05 OrthoFinder output from all 47 species
Adi_g020430 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47504 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03230 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G091500.1 At-RSZ22a,... RNA splicing factor *(RSZ21/22) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G002300.1 At-RSZ22a,... RNA splicing factor *(RSZ21/22) & original description:... 0.04 OrthoFinder output from all 47 species
Cre09.g408200 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dcu_g41811 At-RSZ22a, RSZ22a not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19035 At-RSZ22a, RSZ22a not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19889 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.09 OrthoFinder output from all 47 species
MA_10435943g0010 At-RSZ22a, RSZ22a RSZ21/22 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Msp_g12972 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19642 RSZ21, At-RSZ21,... RNA splicing factor *(RSZ21/22) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g33795 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44647 No alias RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 43 58
No external refs found!