Spa_g53868


Description : not classified & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g53868

Target Alias Description ECC score Gene Family Method Actions
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01451 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14973 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39841 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0178.g056166 No alias platform ATPase CDC48 & original description: CDS=301-2751 0.05 OrthoFinder output from all 47 species
Azfi_s0210.g058064 No alias platform ATPase CDC48 & original description: CDS=1-2484 0.03 OrthoFinder output from all 47 species
Cba_g16600 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025723001 No alias Cell division control protein 48 homolog D... 0.03 OrthoFinder output from all 47 species
GSVIVT01025783001 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Msp_g06020 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g069720.2.1 Solyc11g069720 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045048 protein insertion into ER membrane IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 2 98
IPR041569 AAA_lid_3 120 160
IPR015415 Vps4_C 181 211
No external refs found!