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  5. Spa_g54015

Spa_g54015


Description : not classified & original description: none


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54015

Target Alias Description ECC score Gene Family Method Actions
Adi_g007707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014576 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g076637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06086 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g34174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61850.t1 Aspi01Gene61850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G068400.1 Ceric.21G068400 not classified & original description: pacid=50603032... 0.03 OrthoFinder output from all 47 species
Cre17.g741850 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g02177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g41681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g03890.1 LOC_Os11g03890 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g06242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g08570.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g05815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413714 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc02g038816.1.1 Solyc02g038816 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g065730.3.1 Solyc11g065730 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g52715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026627_P001 Zm00001e026627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 231 298
IPR000504 RRM_dom 112 176
No external refs found!