1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g55229

Spa_g55229


Description : component *(eL42) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001983 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001983_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g55229
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00106300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
AMTR_s00077p00123980 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
AT3G23390 No alias Zinc-binding ribosomal protein family protein 0.03 OrthoFinder output from all 47 species
AT4G14320 No alias Zinc-binding ribosomal protein family protein 0.16 OrthoFinder output from all 47 species
Adi_g074466 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g123881 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g26606 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g17011 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g33471 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0111.g045692 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0390.g067675 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.07G068200.1 Ceric.07G068200 component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.14G031000.1 Ceric.14G031000 component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.29G042400.1 Ceric.29G042400 component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000489.11 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Cre06.g310700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Dac_g46318 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dcu_g17062 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g26679 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01012052001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01032097001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Gb_13148 No alias component RPL36a of LSU proteome component 0.1 OrthoFinder output from all 47 species
Gb_34419 No alias component RPL36a of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os07g26740.1 LOC_Os07g26740 component RPL36a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Len_g26688 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g22707 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
MA_99845g0010 No alias component RPL36a of LSU proteome component 0.15 OrthoFinder output from all 47 species
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.1 OrthoFinder output from all 47 species
Msp_g06398 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ore_g00450 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g60179 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pp3c26_11220V3.1 Pp3c26_11220 Zinc-binding ribosomal protein family protein 0.08 OrthoFinder output from all 47 species
Pp3c3_10260V3.1 Pp3c3_10260 Zinc-binding ribosomal protein family protein 0.07 OrthoFinder output from all 47 species
Pp3c4_27290V3.1 Pp3c4_27290 Zinc-binding ribosomal protein family protein 0.04 OrthoFinder output from all 47 species
Pp3c7_20120V3.1 Pp3c7_20120 Zinc-binding ribosomal protein family protein 0.02 OrthoFinder output from all 47 species
Ppi_g27814 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g28165 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007497 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009958 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g05799 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07243 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g23302 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo161986 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Solyc03g112850.3.1 Solyc03g112850 component RPL36a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Tin_g29053 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Zm00001e010489_P002 Zm00001e010489 component RPL36a of LSU proteome component 0.19 OrthoFinder output from all 47 species
Zm00001e033410_P001 Zm00001e033410 component RPL36a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e035123_P001 Zm00001e035123 component RPL36a of LSU proteome component 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 110 185
No external refs found!