Spa_g56619 (ARF6)

Aliases : ARF6

Description : not classified & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g56619

Target	Alias	Description	ECC score	Gene Family Method
Adi_g098002	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107312	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110089	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06732	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g57848	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07961	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22072	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.03	OrthoFinder output from all 47 species
Cba_g15068	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g19055	ARF6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34017	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g37448	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g16977	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g20944	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015035001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Len_g24419	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g29145	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_566086g0010	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Msp_g13395	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g25154	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29226	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g25160	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g16707	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo115320	ARF6	Auxin response factor 25 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Tin_g10839	ARF1	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e017798_P003	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e018761_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e021527_P006	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	1	49

External Links

No external refs found!

Spa_g56619 (ARF6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation