1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g56724

Spa_g56724


Description : not classified & original description: none


Gene families : OG0001109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001109_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56724
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT4G27280 No alias Calcium-binding EF-hand family protein 0.02 OrthoFinder output from all 47 species
Adi_g115388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05269 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g42174 PBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59479 PBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16361.t1 PBP1, Aspi01Gene16361 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49047.t1 PBP1, Aspi01Gene49047 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63044.t1 PBP1, Aspi01Gene63044 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63046.t1 PBP1, Aspi01Gene63046 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63047.t1 PBP1, Aspi01Gene63047 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63048.t1 PBP1, Aspi01Gene63048 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G000300.1 Ceric.24G000300 not classified & original description: pacid=50628799... 0.02 OrthoFinder output from all 47 species
Ceric.30G075700.1 PBP1, Ceric.30G075700 not classified & original description: pacid=50608449... 0.03 OrthoFinder output from all 47 species
Ceric.30G075800.1 PBP1, Ceric.30G075800 not classified & original description: pacid=50608432... 0.04 OrthoFinder output from all 47 species
Dcu_g00624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014539001 PBP1 Calcium-binding protein KRP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os06g46950.1 LOC_Os06g46950 Calcium-binding protein KIC OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g01599 PBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29957 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10168324g0010 No alias Calcium-binding protein KIC OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10435835g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g09603 PBP1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19618 PBP1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g12034 PBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g053050.1.1 Solyc07g053050 Calcium-binding protein KRP1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g006660.3.1 Solyc10g006660 Calcium-binding protein KRP1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g006700.1.1 Solyc10g006700 Calcium-binding protein KRP1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g57374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013045_P001 Zm00001e013045 Calcium-binding protein KIC OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 69 117
No external refs found!