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  5. Dcu_g00843

Dcu_g00843 (At-RSZ22a, RSZ22a)


Aliases : At-RSZ22a, RSZ22a

Description : RNA splicing factor *(RSZ21/22) & original description: none


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g00843
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT2G24590 At-RSZ22a, RSZ22a RNA recognition motif and CCHC-type zinc finger domains... 0.04 OrthoFinder output from all 47 species
AT4G31580 RSZ22, At-RSZ22,... serine/arginine-rich 22 0.03 OrthoFinder output from all 47 species
Cre09.g408200 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dde_g15858 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033172001 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Pp3c11_26750V3.1 At-RSZ22a,... serine/arginine-rich 22 0.01 OrthoFinder output from all 47 species
Sam_g13208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51941 At-RSZ22a, RSZ22a not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015077_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e016090_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e022939_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e023726_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e036288_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 61
IPR001878 Znf_CCHC 85 100
No external refs found!