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  5. Dcu_g03193

Dcu_g03193


Description : endomembrane trafficking ATG6-stability regulator protein *(TRAF1) & original description: none


Gene families : OG0003009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g03193
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT1G04300 No alias TRAF-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G43560 No alias TRAF-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004673 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Adi_g067633 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Aev_g48943 No alias endomembrane trafficking ATG6-stability regulator... 0.07 OrthoFinder output from all 47 species
Als_g21634 No alias endomembrane trafficking ATG6-stability regulator... 0.05 OrthoFinder output from all 47 species
Aspi01Gene55554.t1 Aspi01Gene55554 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g014184 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Cba_g21614 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Ceric.26G060700.1 Ceric.26G060700 endomembrane trafficking ATG6-stability regulator... 0.06 OrthoFinder output from all 47 species
Cre12.g494000 No alias Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.02 OrthoFinder output from all 47 species
Ehy_g07893 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Ehy_g19259 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
GSVIVT01018133001 No alias Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.03 OrthoFinder output from all 47 species
LOC_Os05g43280.1 LOC_Os05g43280 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.09 OrthoFinder output from all 47 species
LOC_Os12g40520.1 LOC_Os12g40520 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 OrthoFinder output from all 47 species
Lfl_g10345 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
MA_10434493g0010 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.05 OrthoFinder output from all 47 species
Mp8g14880.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 OrthoFinder output from all 47 species
Ore_g36306 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Ppi_g15640 No alias endomembrane trafficking ATG6-stability regulator... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018228 No alias endomembrane trafficking ATG6-stability regulator... 0.05 OrthoFinder output from all 47 species
Sam_g08395 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Solyc03g005430.4.1 Solyc03g005430 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species
Solyc09g089560.4.1 Solyc09g089560 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 OrthoFinder output from all 47 species
Spa_g05754 No alias endomembrane trafficking ATG6-stability regulator... 0.05 OrthoFinder output from all 47 species
Zm00001e003140_P001 Zm00001e003140 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.07 OrthoFinder output from all 47 species
Zm00001e019653_P002 Zm00001e019653 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.05 OrthoFinder output from all 47 species
Zm00001e027387_P004 Zm00001e027387 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 OrthoFinder output from all 47 species
Zm00001e032087_P004 Zm00001e032087 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 71 188
No external refs found!