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  5. Dcu_g05610

Dcu_g05610 (ATATM1, ATM1)


Aliases : ATATM1, ATM1

Description : subfamily ABCB transporter & original description: none


Gene families : OG0002075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05610
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021126.3 ATATM1, ATM1 ABC transporter B family member 24, mitochondrial... 0.02 OrthoFinder output from all 47 species
Cre10.g443000 ATATM3, STA1, ATM3 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Cre12.g561550 ATATM3, STA1, ATM3 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
LOC_Os06g03770.1 ATATM3, STA1,... transport protein ATM of mitochondrial ISC system export... 0.02 OrthoFinder output from all 47 species
Nbi_g04875 ATATM1, ATM1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 437 586
IPR011527 ABC1_TM_dom 97 375
No external refs found!