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  5. Dcu_g05836

Dcu_g05836 (DRD3, ATNRPD1B,...)


Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5

Description : component *(NRPE1) of RNA polymerase V complex & original description: none


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05836

Target Alias Description ECC score Gene Family Method Actions
Ala_g13479 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ceric.27G060600.1 DRD3, ATNRPD1B,... not classified & original description: pacid=50605432... 0.03 OrthoFinder output from all 47 species
GSVIVT01013491001 DRD3, ATNRPD1B,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
GSVIVT01019869001 NRPD1A, POL IVA,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
LOC_Os02g05880.1 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.03 OrthoFinder output from all 47 species
Len_g07261 NRPD1A, POL IVA,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20487 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Msp_g21586 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g38982 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g46354 NRPD1A, POL IVA,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e025206_P001 DRD3, ATNRPD1B,... subunit 1 of Pol V RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 1355 1427
IPR000722 RNA_pol_asu 504 667
IPR007066 RNA_pol_Rpb1_3 673 818
IPR007081 RNA_pol_Rpb1_5 995 1096
IPR007080 RNA_pol_Rpb1_1 17 451
No external refs found!