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  5. Dcu_g06106

Dcu_g06106 (RPL4)


Aliases : RPL4

Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g06106
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00221060 RPL4,... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT1G07320 RPL4 ribosomal protein L4 0.11 OrthoFinder output from all 47 species
Adi_g078975 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g05983 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g20889 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Aob_g13415 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Aop_g05120 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Azfi_s0056.g034220 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ceric.09G057300.1 RPL4, Ceric.09G057300 component *(uL4c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Cre11.g479500 RPL4 Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
Dac_g21787 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dde_g06392 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g02216 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
GSVIVT01024788001 RPL4 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.07 OrthoFinder output from all 47 species
Gb_03469 RPL4 component psRPL4 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os03g15870.1 RPL4, LOC_Os03g15870 component psRPL4 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Len_g13257 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Lfl_g01030 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_2315568g0010 RPL4 50S ribosomal protein L4, chloroplastic OS=Nicotiana... 0.08 OrthoFinder output from all 47 species
MA_9845329g0010 RPL4 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp1g18940.1 RPL4 component psRPL4 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Msp_g19825 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g14226 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g08496 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pnu_g10727 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ppi_g15929 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026142 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc07g061900.3.1 RPL4, Solyc07g061900 component psRPL4 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Spa_g08728 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Tin_g24110 RPL4 component *(uL4c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e001165_P001 RPL4, Zm00001e001165 component psRPL4 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 70 256
No external refs found!