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  5. Dcu_g06480

Dcu_g06480 (ATRZ-1A)


Aliases : ATRZ-1A

Description : RNA chaperone *(RZ1) & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g06480
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cba_g27479 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38953 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016249001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01033897001 No alias Small RNA-binding protein 11, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os04g33810.1 LOC_Os04g33810 Small RNA-binding protein 11, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os07g08960.1 LOC_Os07g08960 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
LOC_Os12g31800.1 GR-RBP3, LOC_Os12g31800 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Len_g07508 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30141 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc03g071560.4.1 Solyc03g071560 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc10g081180.2.1 GR-RBP3, Solyc10g081180 RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Solyc11g008210.3.1 Solyc11g008210 Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e005260_P002 Zm00001e005260 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Zm00001e018330_P004 GR-RBP3, Zm00001e018330 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Zm00001e039608_P001 GR-RBP3, Zm00001e039608 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 119 134
IPR000504 RRM_dom 9 78
No external refs found!