Dcu_g07132


Description : group-II intron mitochondrial splicing factor *(MISF68) & original description: none


Gene families : OG0005181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005181_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g07132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00273090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74750... 0.03 OrthoFinder output from all 47 species
Aev_g01517 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Cba_g03382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_10339 No alias Pentatricopeptide repeat-containing protein At1g18900... 0.04 OrthoFinder output from all 47 species
LOC_Os12g44170.1 LOC_Os12g44170 Pentatricopeptide repeat-containing protein At1g74750... 0.02 OrthoFinder output from all 47 species
Pir_g09757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 479 508
IPR002885 Pentatricopeptide_repeat 689 718
IPR002885 Pentatricopeptide_repeat 577 608
IPR002885 Pentatricopeptide_repeat 510 557
IPR002885 Pentatricopeptide_repeat 720 767
IPR002885 Pentatricopeptide_repeat 615 661
No external refs found!