Aliases : ATCHR12
Description : SMARCA component *(SYD/BRM/MINU) & original description: none
Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00053p00098350 | CHR5,... | RNA biosynthesis.RNA polymerase II-dependent... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00071p00058700 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00090p00148990 | SYD, CHR3,... | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| AT2G13370 | CHR5 | chromatin remodeling 5 | 0.06 | OrthoFinder output from all 47 species | |
| AT2G25170 | PKL, GYM, CHR6,... | chromatin remodeling factor CHD3 (PICKLE) | 0.03 | OrthoFinder output from all 47 species | |
| AT2G28290 | SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases... | 0.06 | OrthoFinder output from all 47 species | |
| AT3G06010 | ATCHR12 | Homeotic gene regulator | 0.08 | OrthoFinder output from all 47 species | |
| AT3G06400 | CHR11 | chromatin-remodeling protein 11 | 0.02 | OrthoFinder output from all 47 species | |
| AT5G44800 | PKR1, CHR4 | chromatin remodeling 4 | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g011533 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g012014 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g061147 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g078005 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g104730 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g107365 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g04898 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g09087 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aev_g41954 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g02726 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g11507 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g12634 | PKL, GYM, CHR6,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g17670 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.08 | OrthoFinder output from all 47 species | |
| Ala_g27421 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g36219 | ATCHR12 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g01971 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g01984 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g16533 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g59182 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g14299 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g18236 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g29249 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g29989 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13768 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g27471 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene14150.t2 | CHR11, Aspi01Gene14150 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0007.g010662 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0013.g013433 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0129.g048917 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.03G025400.1 | PKL, GYM, CHR6,... | not classified & original description: pacid=50572032... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.06G006600.1 | ATCHR12, Ceric.06G006600 | SMARCA component *(SYD/BRM/MINU) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.10G020300.1 | CHR5, Ceric.10G020300 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.1Z205000.1 | PKR1, CHR4,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.36G015700.1 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.37G008600.1 | SYD, CHR3,... | SMARCA component *(SYD/BRM/MINU) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000350.9 | PKR2 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020960.24 | CHR5 | Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Cre03.g179300 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.01 | OrthoFinder output from all 47 species | |
| Cre08.g377200 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g390000 | CHR17 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.01 | OrthoFinder output from all 47 species | |
| Cre12.g508150 | CHR11 | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g09430 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g15247 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g05070 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07147 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g10042 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g15984 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g18387 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g29228 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01012117001 | PKR1, CHR4 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01017791001 | CHR17 | Chromatin organisation.chromatin remodeling... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01017820001 | SYD, CHR3 | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01035901001 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01037235001 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_16310 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_16961 | PKR1, CHR4 | chromatin remodeling factor (Chd3/Mi-2) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_18673 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_39649 | CHR17 | chromatin remodeling factor (Iswi) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g05230.1 | ATCHR12, LOC_Os05g05230 | chromatin remodeling factor (Snf2) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g08480.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os07g31450.1 | PKR1, CHR4,... | chromatin remodeling factor (Chd3/Mi-2) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os07g46590.1 | CHR5, LOC_Os07g46590 | chromatin remodeling factor (Chd1). component CHR5 of... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g27060.1 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g01407 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.08 | OrthoFinder output from all 47 species | |
| Len_g08675 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g11421 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g29294 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g57697 | PKL, GYM, CHR6,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g04300 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g16058 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g30624 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
| MA_102992g0020 | CHR11 | Probable chromatin-remodeling complex ATPase chain... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10427196g0010 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10430012g0010 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.05 | OrthoFinder output from all 47 species | |
| MA_141135g0010 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.04 | OrthoFinder output from all 47 species | |
| MA_8926002g0010 | SYD, CHR3 | Chromatin structure-remodeling complex protein SYD... | 0.07 | OrthoFinder output from all 47 species | |
| MA_8990972g0010 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g15030.1 | CHR17 | chromatin remodeling factor (Iswi) | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g00040.1 | PKR1, CHR4 | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | OrthoFinder output from all 47 species | |
| Mp5g24460.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g17660.1 | ATCHR12 | chromatin remodeling factor (Snf2) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g13222 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14766 | PKL, GYM, CHR6,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g14786 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g16227 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g02510 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g10938 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g12025 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g12701 | CHR11 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g12901 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g16130 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g18803 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g25685 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g26259 | SYD, CHR3 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g36640 | PKL, GYM, CHR6,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g15839 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g37964 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g13843 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0046.g013333 | PKL, GYM, CHR6,... | not classified & original description: CDS=412-5028 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0089.g018707 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14615 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16204 | No alias | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g29220 | No alias | component *(CHR5) of SAGA transcription co-activator... | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g36172 | No alias | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g40553 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo155996 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| Smo177985 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
| Smo440203 | CHR11 | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| Smo440815 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g067390.4.1 | CHR11, Solyc01g067390 | chromatin remodeling factor (Iswi) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc02g068560.3.1 | PKR1, CHR4,... | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g065730.3.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g062010.3.1 | SYD, CHR3, Solyc11g062010 | chromatin remodeling factor (Snf2) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc12g099910.2.1 | CHR5, Solyc12g099910 | chromatin remodeling factor (Chd1). component CHR5 of... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g17788 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g28947 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g30961 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g08468 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e010722_P005 | ATCHR12, Zm00001e010722 | Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e017643_P001 | CHR17, Zm00001e017643 | chromatin remodeling factor (Iswi) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026331_P001 | CHR17, Zm00001e026331 | chromatin remodeling factor (Iswi) | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e030969_P003 | SYD, CHR3, Zm00001e030969 | chromatin remodeling factor (Snf2) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e040406_P002 | ATCHR12, Zm00001e040406 | chromatin remodeling factor (Snf2) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0042393 | histone binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |
