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  5. Dcu_g08166

Dcu_g08166


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Ala_g31168 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g09026 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g26993 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28189 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.1Z201600.1 Ceric.1Z201600 not classified & original description: pacid=50565787... 0.04 OrthoFinder output from all 47 species
Ceric.29G078100.1 Ceric.29G078100 not classified & original description: pacid=50625063... 0.04 OrthoFinder output from all 47 species
Dcu_g25879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40960 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45923 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g48675 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g18446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20585 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_28758 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.04 OrthoFinder output from all 47 species
Len_g53944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_475393g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Nbi_g06656 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08010 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20612 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g23524 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32359 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05130 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15736 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g29795 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03862 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33514 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05328 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g28712 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32279 MEF21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g43237 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.02 OrthoFinder output from all 47 species
Sam_g26887 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02687 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e016542_P001 Zm00001e016542 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 566 597
IPR046848 E_motif 618 652
IPR002885 Pentatricopeptide_repeat 94 142
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 194 243
IPR002885 Pentatricopeptide_repeat 498 547
IPR002885 Pentatricopeptide_repeat 270 295
No external refs found!