Aliases : REME1
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00076010 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | OrthoFinder output from all 47 species | |
| AT5G37570 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g001705 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g069231 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07480 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07519 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g14128 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g24134 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g39237 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g06425 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g14037 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27890 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g30166 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g37342 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g40270 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07004 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g16820 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g28421 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70862 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene12870.t1 | Aspi01Gene12870 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene69669.t1 | CRR22, Aspi01Gene69669 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0027.g023505 | No alias | not classified & original description: CDS=32-2620 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0063.g035318 | VAC1, ECB2, ATECB2 | not classified & original description: CDS=1-1986 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0064.g035587 | No alias | not classified & original description: CDS=1-2688 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0073.g037188 | CRR22 | not classified & original description: CDS=1-1875 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0099.g044113 | No alias | not classified & original description: CDS=1-1752 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0117.g046573 | No alias | not classified & original description: CDS=1-1419 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g06540 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06580 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g07505 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07743 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07756 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g29689 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g57497 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G097800.1 | Ceric.04G097800 | not classified & original description: pacid=50631082... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.09G065700.1 | Ceric.09G065700 | not classified & original description: pacid=50586915... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G040900.1 | Ceric.11G040900 | not classified & original description: pacid=50596742... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.13G082600.1 | Ceric.13G082600 | not classified & original description: pacid=50636923... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.14G013800.1 | Ceric.14G013800 | not classified & original description: pacid=50633719... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G093100.1 | EMB2758, Ceric.14G093100 | not classified & original description: pacid=50634261... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.15G054500.1 | CRR22, Ceric.15G054500 | not classified & original description: pacid=50639954... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z048400.1 | Ceric.1Z048400 | not classified & original description: pacid=50571131... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.23G038700.1 | Ceric.23G038700 | not classified & original description: pacid=50609782... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G013500.1 | Ceric.26G013500 | not classified & original description: pacid=50600195... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.27G036800.1 | VAC1, ECB2,... | not classified & original description: pacid=50605276... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G055900.1 | Ceric.28G055900 | not classified & original description: pacid=50569676... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G007900.1 | Ceric.30G007900 | not classified & original description: pacid=50608292... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G033800.1 | Ceric.30G033800 | not classified & original description: pacid=50608836... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.32G048400.1 | Ceric.32G048400 | not classified & original description: pacid=50598667... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.37G010300.1 | Ceric.37G010300 | not classified & original description: pacid=50616652... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.37G034100.1 | Ceric.37G034100 | not classified & original description: pacid=50616957... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g04861 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g30446 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07728 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08084 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08893 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g08943 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g17197 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g26818 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g40681 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g47766 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g47935 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g04440 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g24377 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01000244001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01000968001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01003124001 | OTP86 | Pentatricopeptide repeat-containing protein At3g63370,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01007811001 | No alias | Pentatricopeptide repeat-containing protein At3g22690... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01008721001 | No alias | Pentatricopeptide repeat-containing protein At5g40410,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01015233001 | EMB2261 | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015466001 | LPA66 | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01029382001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01030836001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01035491001 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01036142001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01037258001 | No alias | Pentatricopeptide repeat-containing protein At5g27110... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_00776 | No alias | Pentatricopeptide repeat-containing protein At5g50390,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g01115.1 | LOC_Os01g01115 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g20420.1 | LOC_Os07g20420 | Pentatricopeptide repeat-containing protein At3g26782,... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06232 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06745 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07126 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07842 | DOT4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g33318 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10427854g0020 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.04 | OrthoFinder output from all 47 species | |
| MA_30949g0010 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_65500g0010 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_681272g0010 | CRR2 | Pentatricopeptide repeat-containing protein At3g46790,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_8893194g0010 | MEF1 | RNA editing factor (MEF1) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g06173 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g16214 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g40957 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g05873 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g27841 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g32355 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g41725 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g11772 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g28912 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g32622 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57550 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57712 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g58854 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g05872 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g22233 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g31411 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53727 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0056.g014554 | No alias | not classified & original description: CDS=1-3528 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0063.g015714 | CRR22 | not classified & original description: CDS=1-1887 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0097.g019430 | No alias | not classified & original description: CDS=1-4416 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27497 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g27765 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g36708 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g38969 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g090440.1.1 | LPA66, Solyc09g090440 | Pentatricopeptide repeat-containing protein At5g66520... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g08436 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g15227 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g18026 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g47727 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g22810 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g24828 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g26453 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g39862 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e005246_P001 | Zm00001e005246 | Pentatricopeptide repeat-containing protein At2g41080... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e013713_P001 | Zm00001e013713 | Pentatricopeptide repeat-containing protein At4g20770... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015440_P001 | CRR22, Zm00001e015440 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e020567_P001 | Zm00001e020567 | RNA editing factor (MEF7) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e022858_P001 | Zm00001e022858 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e030553_P001 | Zm00001e030553 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0007275 | multicellular organism development | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| CC | GO:0030915 | Smc5-Smc6 complex | IEP | HCCA |
| BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
| BP | GO:0032502 | developmental process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0048856 | anatomical structure development | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0106068 | SUMO ligase complex | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR046848 | E_motif | 414 | 476 |
| IPR002885 | Pentatricopeptide_repeat | 1 | 40 |
| IPR002885 | Pentatricopeptide_repeat | 299 | 329 |
| IPR002885 | Pentatricopeptide_repeat | 97 | 127 |
| IPR002885 | Pentatricopeptide_repeat | 170 | 196 |
| IPR002885 | Pentatricopeptide_repeat | 271 | 295 |
| IPR002885 | Pentatricopeptide_repeat | 70 | 93 |
| IPR002885 | Pentatricopeptide_repeat | 198 | 228 |
| No external refs found! |
