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  5. Dcu_g09431

Dcu_g09431 (EMB1989, RPB2, NRPB2)


Aliases : EMB1989, RPB2, NRPB2

Description : component *(NRPB2) of RNA polymerase II complex & original description: none


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g09431

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00246930 NRPC2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.07 OrthoFinder output from all 47 species
AMTR_s00020p00247890 NRPC2,... DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00181410 EMB1989, RPB2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species
AT5G45140 NRPC2 nuclear RNA polymerase C2 0.02 OrthoFinder output from all 47 species
Adi_g061129 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Adi_g103384 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Aev_g39406 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ala_g05404 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ala_g21244 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.1 OrthoFinder output from all 47 species
Als_g03892 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.08 OrthoFinder output from all 47 species
Aspi01Gene15628.t1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47966.t1 NRPC2, Aspi01Gene47966 component *(NRPC2) of RNA polymerase III complex &... 0.04 OrthoFinder output from all 47 species
Ceric.05G021300.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Ceric.30G032600.1 NRPC2, Ceric.30G032600 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000158.16 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.10 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre02.g075150 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Cre12.g542800 NRPC2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Dde_g01758 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g17296 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020543001 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.1 OrthoFinder output from all 47 species
GSVIVT01035963001 DRD2, NRPE2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
GSVIVT01036596001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01036597001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_30006 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
LOC_Os03g44484.1 EMB1989, RPB2,... DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.03 OrthoFinder output from all 47 species
LOC_Os04g54840.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 OrthoFinder output from all 47 species
Len_g16317 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Len_g29891 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g04274 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g12805 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
MA_10233545g0010 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.03 OrthoFinder output from all 47 species
MA_10429035g0010 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.02 OrthoFinder output from all 47 species
MA_10429035g0020 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species
MA_10429035g0030 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp4g21160.1 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp5g21260.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Nbi_g01478 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Nbi_g39106 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Ore_g25703 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Pir_g54715 EMB1989, RPB2, NRPB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g16479 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Sam_g26686 No alias component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Smo148107 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.07 OrthoFinder output from all 47 species
Smo443461 NRPC2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 OrthoFinder output from all 47 species
Solyc02g078260.3.1 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
Solyc10g078860.2.1 NRPC2, Solyc10g078860 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e005007_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e012400_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 467 531
IPR007644 RNA_pol_bsu_protrusion 33 442
IPR007642 RNA_pol_Rpb2_2 203 394
IPR007641 RNA_pol_Rpb2_7 1081 1172
IPR007646 RNA_pol_Rpb2_4 566 627
IPR007120 DNA-dir_RNAP_su2_dom 709 1079
IPR007647 RNA_pol_Rpb2_5 651 702
No external refs found!