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  5. Dcu_g10783

Dcu_g10783


Description : component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im) complex & original description: none


Gene families : OG0002089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10783
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Aev_g34624 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Ala_g02360 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Als_g14331 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Aob_g14769 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Aob_g17567 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.06 OrthoFinder output from all 47 species
Aop_g12901 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene58215.t1 Aspi01Gene58215 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Cba_g11857 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Cba_g77752 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Ceric.18G063400.1 Ceric.18G063400 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.05 OrthoFinder output from all 47 species
GSVIVT01000588001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.03 OrthoFinder output from all 47 species
GSVIVT01014675001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.04 OrthoFinder output from all 47 species
Len_g15072 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Lfl_g03230 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Nbi_g03128 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.06 OrthoFinder output from all 47 species
Pnu_g16653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13762 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Sam_g16242 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Spa_g48266 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Tin_g12469 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Tin_g25202 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 344 412
No external refs found!