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  5. Dcu_g11136

Dcu_g11136


Description : component *(uS11) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001893 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11136
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104960 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
AT2G36160 No alias Ribosomal protein S11 family protein 0.18 OrthoFinder output from all 47 species
AT3G11510 No alias Ribosomal protein S11 family protein 0.12 OrthoFinder output from all 47 species
AT3G52580 No alias Ribosomal protein S11 family protein 0.18 OrthoFinder output from all 47 species
Adi_g015044 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Adi_g025760 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ala_g00543 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g20351 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Als_g07705 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g07706 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g23673 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00922 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Azfi_s0015.g013910 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Azfi_s0228.g059059 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Azfi_s0339.g065604 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Cba_g04340 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G067700.1 Ceric.01G067700 component *(uS11) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Ceric.38G005500.1 Ceric.38G005500 component *(uS11) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.44 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Cre11.g480150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dac_g08660 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g06656 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g27158 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g26059 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g13001 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01021436001 ATTRANS11, TRANS11 Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder output from all 47 species
GSVIVT01033877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
GSVIVT01036096001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder output from all 47 species
Gb_17066 No alias component RPS14 of SSU proteome 0.08 OrthoFinder output from all 47 species
Gb_17067 No alias component RPS14 of SSU proteome 0.12 OrthoFinder output from all 47 species
LOC_Os02g06700.1 LOC_Os02g06700 component RPS14 of SSU proteome 0.11 OrthoFinder output from all 47 species
LOC_Os02g33140.1 LOC_Os02g33140 component RPS14 of SSU proteome 0.19 OrthoFinder output from all 47 species
Len_g18745 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g19558 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g25093 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
MA_113075g0010 No alias component RPS14 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp8g03250.1 No alias component RPS14 of SSU proteome 0.25 OrthoFinder output from all 47 species
Mp8g10900.1 No alias component RPS14 of SSU proteome 0.17 OrthoFinder output from all 47 species
Msp_g19753 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Msp_g36870 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g26083 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c15_22240V3.1 Pp3c15_22240 Ribosomal protein S11 family protein 0.1 OrthoFinder output from all 47 species
Pp3c9_21480V3.1 Pp3c9_21480 Ribosomal protein S11 family protein 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007107 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g17417 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Sam_g35851 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Smo183051 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Solyc02g070570.4.1 Solyc02g070570 component RPS14 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc09g010100.3.1 Solyc09g010100 component RPS14 of SSU proteome 0.13 OrthoFinder output from all 47 species
Solyc10g083280.4.1 Solyc10g083280 component RPS14 of SSU proteome 0.17 OrthoFinder output from all 47 species
Spa_g10828 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Spa_g11705 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Spa_g42532 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g51819 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Tin_g17077 No alias component *(uS11) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e022659_P002 Zm00001e022659 component RPS14 of SSU proteome 0.13 OrthoFinder output from all 47 species
Zm00001e030302_P001 Zm00001e030302 component RPS14 of SSU proteome 0.17 OrthoFinder output from all 47 species
Zm00001e030303_P001 Zm00001e030303 component RPS14 of SSU proteome 0.11 OrthoFinder output from all 47 species
Zm00001e030304_P001 Zm00001e030304 component RPS14 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e037468_P002 Zm00001e037468 component RPS14 of SSU proteome 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001971 Ribosomal_S11 68 186
No external refs found!