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  5. Dcu_g11479

Dcu_g11479


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11479

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Ala_g12351 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05294 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g20365 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os01g41650.1 LOC_Os01g41650 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Len_g18260 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32279 MEF21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021374 No alias not classified & original description: CDS=1-1881 0.02 OrthoFinder output from all 47 species
Solyc01g081560.2.1 Solyc01g081560 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Spa_g21674 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g44998 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g26533 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e041987_P001 Zm00001e041987 Pentatricopeptide repeat-containing protein At2g37320... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 439 464
IPR002885 Pentatricopeptide_repeat 105 126
IPR002885 Pentatricopeptide_repeat 237 261
IPR002885 Pentatricopeptide_repeat 539 564
IPR002885 Pentatricopeptide_repeat 363 411
IPR002885 Pentatricopeptide_repeat 263 310
IPR002885 Pentatricopeptide_repeat 465 510
IPR002885 Pentatricopeptide_repeat 161 208
IPR046848 E_motif 582 627
No external refs found!