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  5. Dcu_g12590

Dcu_g12590


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g12590

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT4G14050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G18520 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G43790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067914 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101241 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106085 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03827 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07268 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016134 OTP84 not classified & original description: CDS=1-2358 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016137 No alias not classified & original description: CDS=1-1566 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016204 OTP84 not classified & original description: CDS=27-2648 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g024007 No alias not classified & original description: CDS=1-1332 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031470 No alias not classified & original description: CDS=1-1512 0.04 OrthoFinder output from all 47 species
Azfi_s0114.g046172 No alias not classified & original description: CDS=1-2679 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048736 No alias not classified & original description: CDS=1-3153 0.03 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.04 OrthoFinder output from all 47 species
Azfi_s0731.g084096 No alias not classified & original description: CDS=1-3909 0.03 OrthoFinder output from all 47 species
Azfi_s0889.g091250 No alias not classified & original description: CDS=1-2652 0.03 OrthoFinder output from all 47 species
Cba_g04687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06497 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07270 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G066400.1 Ceric.11G066400 not classified & original description: pacid=50596043... 0.03 OrthoFinder output from all 47 species
Ceric.13G076400.1 Ceric.13G076400 not classified & original description: pacid=50635248... 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.02 OrthoFinder output from all 47 species
Ceric.22G068300.1 Ceric.22G068300 not classified & original description: pacid=50614812... 0.03 OrthoFinder output from all 47 species
Ceric.28G069900.1 Ceric.28G069900 not classified & original description: pacid=50570610... 0.03 OrthoFinder output from all 47 species
Ceric.29G051500.1 Ceric.29G051500 not classified & original description: pacid=50625217... 0.03 OrthoFinder output from all 47 species
Ceric.38G063600.1 Ceric.38G063600 not classified & original description: pacid=50580365... 0.03 OrthoFinder output from all 47 species
Dcu_g06413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08773 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08824 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36635 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03570 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23896 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23831 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010031001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01025574001 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.02 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
LOC_Os03g41530.1 LOC_Os03g41530 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g41040.1 LOC_Os06g41040 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g39090.1 LOC_Os07g39090 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Len_g03808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18010 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18325 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54965 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_112594g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_14938g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_25584g0010 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_305950g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_34492g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
MA_7691g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_81436g0010 OTP84 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Msp_g08590 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g29202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09259 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19928 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47021 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g40990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018665 No alias not classified & original description: CDS=8-2563 0.02 OrthoFinder output from all 47 species
Sam_g03859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25324 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo101239 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Smo75659 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Solyc03g006990.1.1 Solyc03g006990 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
Spa_g01102 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 771 831
IPR002885 Pentatricopeptide_repeat 651 699
IPR002885 Pentatricopeptide_repeat 348 396
IPR002885 Pentatricopeptide_repeat 449 486
IPR002885 Pentatricopeptide_repeat 551 598
IPR002885 Pentatricopeptide_repeat 246 293
IPR002885 Pentatricopeptide_repeat 322 344
IPR002885 Pentatricopeptide_repeat 120 145
IPR002885 Pentatricopeptide_repeat 423 447
IPR002885 Pentatricopeptide_repeat 726 748
IPR002885 Pentatricopeptide_repeat 148 178
No external refs found!