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  5. Dcu_g15498

Dcu_g15498 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g15498
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Als_g04197 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11632 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49762.t1 GL19, AGL19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29512 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000175001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01009393001 AGL104 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Len_g22236 GL19, AGL19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g14037 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42896 AGL16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48749 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc02g089200.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc05g015750.3.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e014926_P001 AGL16, Zm00001e014926 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e022819_P002 AGL16, Zm00001e022819 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e039610_P001 AGL8, FUL, Zm00001e039610 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 94 163
No external refs found!