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  5. Dcu_g17102

Dcu_g17102


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17102

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g034914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08655 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33170 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57869 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g60846 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03817 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008405 No alias not classified & original description: CDS=233-2125 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009330 REME1 not classified & original description: CDS=41-1351 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011663 No alias not classified & original description: CDS=1-3036 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038564 EMB2758 not classified & original description: CDS=1-2661 0.01 OrthoFinder output from all 47 species
Azfi_s0166.g054406 No alias not classified & original description: CDS=1-3468 0.02 OrthoFinder output from all 47 species
Cba_g05269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07105 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16998 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45997 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G031300.1 Ceric.01G031300 not classified & original description: pacid=50591599... 0.01 OrthoFinder output from all 47 species
Ceric.02G054700.1 Ceric.02G054700 not classified & original description: pacid=50584211... 0.02 OrthoFinder output from all 47 species
Ceric.03G011500.1 Ceric.03G011500 not classified & original description: pacid=50571528... 0.02 OrthoFinder output from all 47 species
Ceric.04G068200.1 OTP86, Ceric.04G068200 not classified & original description: pacid=50632337... 0.06 OrthoFinder output from all 47 species
Ceric.04G103800.1 Ceric.04G103800 not classified & original description: pacid=50630749... 0.02 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.02 OrthoFinder output from all 47 species
Ceric.11G015200.1 Ceric.11G015200 not classified & original description: pacid=50595684... 0.05 OrthoFinder output from all 47 species
Ceric.13G028100.1 Ceric.13G028100 not classified & original description: pacid=50635194... 0.03 OrthoFinder output from all 47 species
Ceric.13G050400.1 Ceric.13G050400 not classified & original description: pacid=50636404... 0.03 OrthoFinder output from all 47 species
Ceric.13G057100.1 Ceric.13G057100 not classified & original description: pacid=50635531... 0.02 OrthoFinder output from all 47 species
Ceric.18G077200.1 Ceric.18G077200 not classified & original description: pacid=50621761... 0.03 OrthoFinder output from all 47 species
Ceric.21G046200.1 Ceric.21G046200 not classified & original description: pacid=50604280... 0.03 OrthoFinder output from all 47 species
Ceric.23G032000.1 Ceric.23G032000 not classified & original description: pacid=50611416... 0.03 OrthoFinder output from all 47 species
Ceric.31G002400.1 Ceric.31G002400 not classified & original description: pacid=50574432... 0.02 OrthoFinder output from all 47 species
Ceric.32G048400.1 Ceric.32G048400 not classified & original description: pacid=50598667... 0.02 OrthoFinder output from all 47 species
Ceric.36G048700.1 Ceric.36G048700 not classified & original description: pacid=50569051... 0.02 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.02 OrthoFinder output from all 47 species
Ceric.39G045800.1 VAC1, ECB2,... not classified & original description: pacid=50583112... 0.04 OrthoFinder output from all 47 species
Dac_g12450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35456 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20638 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.02 OrthoFinder output from all 47 species
LOC_Os12g01850.1 LOC_Os12g01850 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g03390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14702 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14691 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23775 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09062 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo70183 OTP84 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Spa_g10182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47167 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 846 889
IPR002885 Pentatricopeptide_repeat 526 573
IPR002885 Pentatricopeptide_repeat 730 776
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 224 272
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 627 675
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 804 825
IPR002885 Pentatricopeptide_repeat 125 152
IPR002885 Pentatricopeptide_repeat 602 622
IPR002885 Pentatricopeptide_repeat 198 219
IPR002885 Pentatricopeptide_repeat 703 724
IPR002885 Pentatricopeptide_repeat 97 122
IPR002885 Pentatricopeptide_repeat 400 424
No external refs found!