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  5. Dcu_g17105

Dcu_g17105


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17105
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Adi_g009533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012462 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g101303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102707 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g113424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11484 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24083 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24418 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g17657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene60910.t1 Aspi01Gene60910 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010319 No alias not classified & original description: CDS=1-1401 0.06 OrthoFinder output from all 47 species
Azfi_s0117.g046522 No alias not classified & original description: CDS=125-2725 0.04 OrthoFinder output from all 47 species
Azfi_s0250.g060212 CRR22 not classified & original description: CDS=1-2343 0.03 OrthoFinder output from all 47 species
Ceric.09G024000.1 EMB2261, Ceric.09G024000 not classified & original description: pacid=50587738... 0.07 OrthoFinder output from all 47 species
Ceric.11G087600.1 OTP84, Ceric.11G087600 not classified & original description: pacid=50595872... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g21496 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38672 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21829 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_01592 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.05 OrthoFinder output from all 47 species
Lfl_g07419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34619 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17470 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g48629 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g12725 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g08807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03380 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g48345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005530 CRR22 not classified & original description: CDS=1-2547 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012043 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1878 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019397 No alias not classified & original description: CDS=1-2220 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.02 OrthoFinder output from all 47 species
Sam_g03885 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo173139 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 281 305
IPR002885 Pentatricopeptide_repeat 483 507
IPR046848 E_motif 727 789
IPR002885 Pentatricopeptide_repeat 105 150
IPR002885 Pentatricopeptide_repeat 609 657
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 308 353
IPR002885 Pentatricopeptide_repeat 407 454
IPR002885 Pentatricopeptide_repeat 509 556
IPR032867 DYW_dom 825 917
No external refs found!