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  5. Dcu_g17242

Dcu_g17242


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17242
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13562 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04444 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05831 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06645 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06803 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06887 RARE1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07235 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10468 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18405 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19247 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26262 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g30417 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30697 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30853 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g39735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54764 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g55233 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g58106 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g23933 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g67869 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g69999 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0032.g024817 No alias not classified & original description: CDS=20-3643 0.03 OrthoFinder output from all 47 species
Cba_g03412 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g04039 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05270 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06540 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07168 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07680 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g07756 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g19889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20419 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g20659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g21823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24198 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29926 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78717 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G047700.1 Ceric.02G047700 not classified & original description: pacid=50586056... 0.05 OrthoFinder output from all 47 species
Ceric.17G003100.1 Ceric.17G003100 not classified & original description: pacid=50617164... 0.06 OrthoFinder output from all 47 species
Ceric.18G024700.1 Ceric.18G024700 not classified & original description: pacid=50621916... 0.04 OrthoFinder output from all 47 species
Ceric.18G069700.1 CRR2, Ceric.18G069700 not classified & original description: pacid=50622363... 0.03 OrthoFinder output from all 47 species
Ceric.19G051600.1 EMB2261, Ceric.19G051600 not classified & original description: pacid=50576223... 0.05 OrthoFinder output from all 47 species
Ceric.20G006900.1 Ceric.20G006900 not classified & original description: pacid=50565918... 0.08 OrthoFinder output from all 47 species
Ceric.23G082400.1 CRR22, Ceric.23G082400 not classified & original description: pacid=50611294... 0.08 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.05 OrthoFinder output from all 47 species
Dac_g09645 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g16645 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g18210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26603 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g29816 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g35954 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36033 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g36078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37654 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
GSVIVT01037562001 PDE247, CLB19 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_15639 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_38249 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
LOC_Os01g41650.1 LOC_Os01g41650 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.03 OrthoFinder output from all 47 species
LOC_Os05g12130.1 EMB2261, LOC_Os05g12130 RNA editing factor (ECD1) 0.04 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.04 OrthoFinder output from all 47 species
LOC_Os06g40860.1 LOC_Os06g40860 Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
LOC_Os07g02280.1 LOC_Os07g02280 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
LOC_Os08g04400.1 LOC_Os08g04400 Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.04 OrthoFinder output from all 47 species
Lfl_g07847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_138689g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_86628g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g01185 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28352 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34234 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04960 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28139 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38474 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02817 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07329 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g12531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13001 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57537 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63498 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63649 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63898 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g66342 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06149 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g06505 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06944 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18601 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g29289 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g45354 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g48495 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g49230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53028 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55201 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g62508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007051 CRR22 not classified & original description: CDS=50-2191 0.03 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 200 222
IPR002885 Pentatricopeptide_repeat 98 121
IPR002885 Pentatricopeptide_repeat 24 52
IPR002885 Pentatricopeptide_repeat 124 170
No external refs found!