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  5. Dcu_g17291

Dcu_g17291 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17291
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
AT1G47720 OSB1 Primosome PriB/single-strand DNA-binding 0.03 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g004440 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036755 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g081057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100866 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23985 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007695 No alias not classified & original description: CDS=1-2262 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012490 No alias not classified & original description: CDS=1-2382 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023788 No alias not classified & original description: CDS=1-3210 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025112 No alias not classified & original description: CDS=1-2496 0.04 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.04 OrthoFinder output from all 47 species
Azfi_s0082.g038704 No alias not classified & original description: CDS=1-2661 0.03 OrthoFinder output from all 47 species
Azfi_s0094.g043395 No alias not classified & original description: CDS=1-2703 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s1562.g104338 OTP84 not classified & original description: CDS=59-2905 0.03 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G084300.1 Ceric.09G084300 not classified & original description: pacid=50586761... 0.03 OrthoFinder output from all 47 species
Ceric.09G085300.1 Ceric.09G085300 not classified & original description: pacid=50587383... 0.03 OrthoFinder output from all 47 species
Ceric.13G057100.1 Ceric.13G057100 not classified & original description: pacid=50635531... 0.03 OrthoFinder output from all 47 species
Ceric.27G064300.1 Ceric.27G064300 not classified & original description: pacid=50606133... 0.03 OrthoFinder output from all 47 species
Ceric.38G046100.1 Ceric.38G046100 not classified & original description: pacid=50579564... 0.03 OrthoFinder output from all 47 species
Dac_g27857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05782 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06472 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08279 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08305 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10377 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17302 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26819 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45851 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010031001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Lfl_g06185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07019 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07396 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g04519 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04595 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13478 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15576 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g31511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46073 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17481 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40875 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17174 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15290 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003876 AMP deaminase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032261 purine nucleotide salvage IEP HCCA
BP GO:0032264 IMP salvage IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043101 purine-containing compound salvage IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0047623 adenosine-phosphate deaminase activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0106380 purine ribonucleotide salvage IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 576 601
IPR002885 Pentatricopeptide_repeat 375 400
IPR002885 Pentatricopeptide_repeat 8 27
IPR046848 E_motif 619 671
IPR002885 Pentatricopeptide_repeat 502 547
IPR002885 Pentatricopeptide_repeat 299 347
IPR002885 Pentatricopeptide_repeat 97 144
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 200 246
IPR002885 Pentatricopeptide_repeat 173 195
No external refs found!