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  5. Dcu_g19847

Dcu_g19847


Description : helicase UAP56 & original description: none


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g19847

Target Alias Description ECC score Gene Family Method Actions
Aev_g13080 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32429 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52184 No alias helicase UAP56 & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g12468 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035967 No alias helicase UAP56 & original description: CDS=1-1335 0.03 OrthoFinder output from all 47 species
LOC_Os01g36890.2 LOC_Os01g36890 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
LOC_Os01g36920.2 LOC_Os01g36920 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Lfl_g13215 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07150 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Spa_g50791 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14284 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31414 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026684_P001 Zm00001e026684 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 277 384
IPR011545 DEAD/DEAH_box_helicase_dom 72 237
No external refs found!