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  5. Dcu_g20664

Dcu_g20664


Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g20664

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154740 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00074370 EMB3011,... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
AMTR_s00110p00073830 ESP3, EMB2733,... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g008220 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g27800 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01897 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11071 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Aop_g01347 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13922 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0580.g078305 No alias not classified & original description: CDS=60-3857 0.04 OrthoFinder output from all 47 species
Azfi_s2562.g112176 No alias not classified & original description: CDS=195-1934 0.03 OrthoFinder output from all 47 species
Ceric.04G078700.1 Ceric.04G078700 not classified & original description: pacid=50630845... 0.02 OrthoFinder output from all 47 species
Ceric.15G036900.1 Ceric.15G036900 RNA helicase *(Prp22) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000796.23 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020531.53 EMB3011 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.25 No alias RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Cre06.g266383 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre07.g349100 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Dac_g30923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
Gb_11931 No alias RNA helicase (Prp22) 0.03 OrthoFinder output from all 47 species
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g11370.1 LOC_Os01g11370 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os06g09280.1 LOC_Os06g09280 RNA helicase (Prp22) 0.04 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.04 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
MA_10428112g0030 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_277016g0010 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
MA_4084g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 OrthoFinder output from all 47 species
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
Nbi_g19475 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44212 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001017 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011158 No alias not classified & original description: CDS=170-2296 0.02 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16823 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g097820.3.1 Solyc09g097820 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Spa_g17882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016478_P002 Zm00001e016478 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 OrthoFinder output from all 47 species
Zm00001e022095_P001 ESP3, EMB2733,... RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
Zm00001e028404_P001 Zm00001e028404 RNA helicase (Prp22) 0.02 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e038305_P001 Zm00001e038305 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 61 213
IPR007502 Helicase-assoc_dom 454 542
IPR011709 DEAD-box_helicase_OB_fold 604 680
IPR001650 Helicase_C 261 391
No external refs found!