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  5. Dcu_g20875

Dcu_g20875


Description : CMF transcription factor & original description: none


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g20875
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.06 OrthoFinder output from all 47 species
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.02 OrthoFinder output from all 47 species
Adi_g105671 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05448 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17463 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01431 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g13738 No alias CMF transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g30657 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g034007 No alias CMF transcription factor & original description: CDS=693-2417 0.04 OrthoFinder output from all 47 species
Ehy_g06850 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07785 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.11 OrthoFinder output from all 47 species
Len_g23704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g60427 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.05 OrthoFinder output from all 47 species
Sam_g34850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g007210.3.1 Solyc04g007210 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Solyc05g009310.3.1 Solyc05g009310 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Spa_g04603 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g47451 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 19 61
IPR010402 CCT_domain 425 467
No external refs found!