1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g25235

Dcu_g25235 (SGR4, ZIG1, VTI1A,...)


Aliases : SGR4, ZIG1, VTI1A, ATVTI11, VTI11, ZIG, ATVTI1A

Description : Qb-type VTI-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g25235

Target Alias Description ECC score Gene Family Method Actions
AT5G39510 SGR4, ZIG1,... Vesicle transport v-SNARE family protein 0.05 OrthoFinder output from all 47 species
Adi_g008512 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
Adi_g008513 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Als_g22401 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Aop_g25830 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
Cre13.g577500 VTI12, VTI1B, ATVTI12 Vesicle trafficking.SNARE target membrane recognition... 0.05 OrthoFinder output from all 47 species
GSVIVT01011463001 ATVTI13, VTI13 Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
LOC_Os01g51120.1 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.02 OrthoFinder output from all 47 species
Len_g03643 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Pp3c17_17260V3.1 SGR4, ZIG1,... Vesicle transport v-SNARE family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000290 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Smo146421 SGR4, ZIG1,... Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
Solyc05g013050.3.1 VTI12, VTI1B,... VTI group Qb-type SNARE protein 0.05 OrthoFinder output from all 47 species
Spa_g00661 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.07 OrthoFinder output from all 47 species
Tin_g06403 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Zm00001e027750_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR007705 Vesicle_trsprt_v-SNARE_N 76 154
No external refs found!