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  5. Dcu_g25879

Dcu_g25879


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g25879

Target Alias Description ECC score Gene Family Method Actions
Aev_g27648 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24034 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36521 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09026 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene04901.t1 Aspi01Gene04901 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42676.t1 Aspi01Gene42676 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g16108 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000936001 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Len_g05421 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g15182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g12042 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17708 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g31739 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39535 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g21816 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g05094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57068 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63503 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g25239 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30107 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Smo182822 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.04 OrthoFinder output from all 47 species
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Smo431043 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.06 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0032502 developmental process IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 313 336
IPR002885 Pentatricopeptide_repeat 212 236
IPR002885 Pentatricopeptide_repeat 139 165
IPR002885 Pentatricopeptide_repeat 414 439
IPR046848 E_motif 459 519
IPR032867 DYW_dom 555 645
IPR002885 Pentatricopeptide_repeat 340 387
IPR002885 Pentatricopeptide_repeat 238 285
No external refs found!