Dcu_g36083 (DCL4, ATDCL4)

Aliases : DCL4, ATDCL4

Description : endoribonuclease (DCL4) of transacting siRNA pathway & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g36083

Target	Alias	Description	ECC score	Gene Family Method
AT1G01040	DCL1, CAF,...	dicer-like 1	0.06	OrthoFinder output from all 47 species
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.04	OrthoFinder output from all 47 species
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.08	OrthoFinder output from all 47 species
Adi_g022447	DCL1, CAF,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Ala_g13307	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
Als_g22807	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Aspi01Gene32281.t1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.05	OrthoFinder output from all 47 species
Ceric.1Z277300.1	DCL1, CAF,...	not classified & original description: pacid=50600427...	0.02	OrthoFinder output from all 47 species
Ceric.22G041000.1	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.05	OrthoFinder output from all 47 species
GSVIVT01001045001	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.03	OrthoFinder output from all 47 species
GSVIVT01035494001	ATDCL3, DCL3	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	OrthoFinder output from all 47 species
LOC_Os01g68120.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.02	OrthoFinder output from all 47 species
Lfl_g03508	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
MA_10437243g0010	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
MA_10437243g0020	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp7g11720.1	DCL4, ATDCL4	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.02	OrthoFinder output from all 47 species
Ore_g16091	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000998	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Smo74321	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
Tin_g29214	DCL4, ATDCL4	endoribonuclease (DCL4) of transacTing siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Zm00001e018890_P004	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003951	NAD+ kinase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006741	NADP biosynthetic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
MF	GO:0061608	nuclear import signal receptor activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	1217	1329
IPR000999	RNase_III_dom	1013	1141
IPR003100	PAZ_dom	848	970
IPR001650	Helicase_C	370	484
IPR006935	Helicase/UvrB_N	23	184

External Links

No external refs found!

Dcu_g36083 (DCL4, ATDCL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation