1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g36349

Dcu_g36349


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g36349

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g081792 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42356 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02043 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18621 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30769 MEF21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05221 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g05266 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05734 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07004 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09867 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20705 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g25570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0012.g012913 No alias not classified & original description: CDS=1-2943 0.03 OrthoFinder output from all 47 species
Azfi_s0024.g020340 No alias not classified & original description: CDS=1-2319 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029993 No alias not classified & original description: CDS=1-1878 0.03 OrthoFinder output from all 47 species
Azfi_s0046.g030178 No alias ssDNA-binding protein *(OSB) & original description: CDS=82-2832 0.03 OrthoFinder output from all 47 species
Cba_g04691 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07757 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G024700.1 Ceric.18G024700 not classified & original description: pacid=50621916... 0.03 OrthoFinder output from all 47 species
Ceric.21G046100.1 Ceric.21G046100 not classified & original description: pacid=50602747... 0.03 OrthoFinder output from all 47 species
Ceric.27G036800.1 VAC1, ECB2,... not classified & original description: pacid=50605276... 0.03 OrthoFinder output from all 47 species
Ceric.31G002400.1 Ceric.31G002400 not classified & original description: pacid=50574432... 0.04 OrthoFinder output from all 47 species
Dac_g19091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06788 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08785 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g40681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
LOC_Os03g38580.1 EMB2261, LOC_Os03g38580 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33700.1 LOC_Os08g33700 Pentatricopeptide repeat-containing protein At3g47530... 0.03 OrthoFinder output from all 47 species
Lfl_g02262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06232 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32911 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28800 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27844 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14836 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18532 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32193 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57069 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63838 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63861 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63864 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03628 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06822 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07585 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000052 EMB2758 not classified & original description: CDS=1-1683 0.03 OrthoFinder output from all 47 species
Sam_g27893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo113974 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.03 OrthoFinder output from all 47 species
Spa_g00965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47727 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g22749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26453 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g39862 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 454 479
IPR002885 Pentatricopeptide_repeat 78 105
IPR002885 Pentatricopeptide_repeat 655 678
IPR002885 Pentatricopeptide_repeat 756 780
IPR002885 Pentatricopeptide_repeat 150 175
IPR002885 Pentatricopeptide_repeat 378 423
IPR002885 Pentatricopeptide_repeat 176 223
IPR002885 Pentatricopeptide_repeat 278 326
IPR002885 Pentatricopeptide_repeat 681 728
IPR002885 Pentatricopeptide_repeat 580 627
IPR002885 Pentatricopeptide_repeat 480 526
No external refs found!