Aliases : ATCNGC20, CNGC20, CNBT1
Description : cyclic nucleotide-gated cation channel *(CNGC) & original description: none
Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00006p00268510 | ATCNGC17,... | Cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00210p00019190 | CNGC5, ATCNGC5,... | Solute transport.channels.VIC superfamily.cyclic... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g15919 | ATCNGC20, CNGC20, CNBT1 | cyclic nucleotide-gated cation channel *(CNGC) &... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g44440.1 | ATCNGC9, CNGC9,... | cyclic nucleotide-gated cation channel (CNGC) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g55080.1 | ATCNGC6, CNGC6,... | cyclic nucleotide-gated cation channel (CNGC) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g08850.1 | ATCNGC17,... | cyclic nucleotide-gated cation channel (CNGC) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g38580.1 | ATCNGC17,... | cyclic nucleotide-gated cation channel (CNGC) | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g40461 | ATCNGC20, CNGC20, CNBT1 | cyclic nucleotide-gated cation channel *(CNGC) &... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10437079g0010 | CNGC5, ATCNGC5 | cyclic nucleotide-gated cation channel (CNGC) | 0.02 | OrthoFinder output from all 47 species | |
| MA_25248g0010 | CNGC5, ATCNGC5 | cyclic nucleotide-gated cation channel (CNGC) | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g30846 | DND1, ATCNGC2, CNGC2 | temperature sensor protein *(CNGC2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g18538 | ATCNGC20, CNGC20, CNBT1 | cyclic nucleotide-gated cation channel *(CNGC) &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g39902 | No alias | cyclic nucleotide-gated cation channel *(CNGC) &... | 0.07 | OrthoFinder output from all 47 species | |
| Smo113786 | ATCNGC9, CNGC9 | Solute transport.channels.VIC superfamily.cyclic... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g005590.3.1 | CNGC5, ATCNGC5,... | cyclic nucleotide-gated cation channel (CNGC) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g010010.2.1 | CNGC5, ATCNGC5,... | cyclic nucleotide-gated cation channel (CNGC) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e016088_P002 | ATCNGC17,... | cyclic nucleotide-gated cation channel (CNGC) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e034885_P002 | ATCNGC17,... | cyclic nucleotide-gated cation channel (CNGC) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005216 | monoatomic ion channel activity | IEA | Interproscan |
| BP | GO:0006811 | monoatomic ion transport | IEA | Interproscan |
| CC | GO:0016020 | membrane | IEA | Interproscan |
| BP | GO:0055085 | transmembrane transport | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006605 | protein targeting | IEP | HCCA |
| BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| CC | GO:0048500 | signal recognition particle | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0051668 | localization within membrane | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005821 | Ion_trans_dom | 140 | 464 |
| No external refs found! |
