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  5. Dcu_g38473

Dcu_g38473


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g38473
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Adi_g003303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099021 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g28165 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49640 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13294 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30723 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36528 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05107 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14037 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008511 No alias not classified & original description: CDS=1-792 0.04 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055669 No alias not classified & original description: CDS=1-2286 0.03 OrthoFinder output from all 47 species
Azfi_s0389.g067649 OTP84 not classified & original description: CDS=1-2388 0.05 OrthoFinder output from all 47 species
Cba_g14131 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g44516 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G033100.1 Ceric.02G033100 not classified & original description: pacid=50586102... 0.03 OrthoFinder output from all 47 species
Ceric.04G078900.1 Ceric.04G078900 not classified & original description: pacid=50631863... 0.03 OrthoFinder output from all 47 species
Ceric.11G086200.1 OTP84, Ceric.11G086200 not classified & original description: pacid=50595902... 0.03 OrthoFinder output from all 47 species
Ceric.12G028500.1 CRR22, Ceric.12G028500 not classified & original description: pacid=50602410... 0.03 OrthoFinder output from all 47 species
Ceric.13G001600.1 Ceric.13G001600 not classified & original description: pacid=50636694... 0.03 OrthoFinder output from all 47 species
Ceric.13G076400.1 Ceric.13G076400 not classified & original description: pacid=50635248... 0.03 OrthoFinder output from all 47 species
Ceric.17G074800.1 Ceric.17G074800 not classified & original description: pacid=50618293... 0.04 OrthoFinder output from all 47 species
Ceric.1Z003200.1 Ceric.1Z003200 not classified & original description: pacid=50628145... 0.04 OrthoFinder output from all 47 species
Ceric.1Z148300.1 Ceric.1Z148300 not classified & original description: pacid=50637132... 0.04 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.03 OrthoFinder output from all 47 species
Ceric.28G059600.1 OTP84, Ceric.28G059600 not classified & original description: pacid=50569965... 0.04 OrthoFinder output from all 47 species
Ceric.28G068300.1 DOT4, Ceric.28G068300 not classified & original description: pacid=50570176... 0.05 OrthoFinder output from all 47 species
Ceric.34G039200.1 Ceric.34G039200 not classified & original description: pacid=50623691... 0.04 OrthoFinder output from all 47 species
Ceric.38G015500.1 Ceric.38G015500 not classified & original description: pacid=50579581... 0.03 OrthoFinder output from all 47 species
Dac_g20433 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g22525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08305 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g18810.1 LOC_Os02g18810 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g03390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04367 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04697 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30167 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44424 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06446 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23499 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Nbi_g05749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10381 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15833 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43234 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03628 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g36024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010805 VAC1, ECB2, ATECB2 not classified & original description: CDS=294-2756 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021987 No alias not classified & original description: CDS=1-1590 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.03 OrthoFinder output from all 47 species
Sam_g15556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo444974 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Spa_g08793 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g39845 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Zm00001e024311_P001 Zm00001e024311 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1148 1172
IPR002885 Pentatricopeptide_repeat 472 499
IPR002885 Pentatricopeptide_repeat 1048 1069
IPR002885 Pentatricopeptide_repeat 240 265
IPR002885 Pentatricopeptide_repeat 742 768
IPR002885 Pentatricopeptide_repeat 441 465
IPR046848 E_motif 1189 1237
IPR002885 Pentatricopeptide_repeat 1074 1120
IPR002885 Pentatricopeptide_repeat 670 717
IPR002885 Pentatricopeptide_repeat 770 817
IPR002885 Pentatricopeptide_repeat 366 413
IPR002885 Pentatricopeptide_repeat 164 213
IPR002885 Pentatricopeptide_repeat 871 918
IPR002885 Pentatricopeptide_repeat 972 1020
IPR002885 Pentatricopeptide_repeat 569 616
IPR002885 Pentatricopeptide_repeat 266 309
No external refs found!