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  5. Dcu_g38523

Dcu_g38523


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g38523

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g025632 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09212 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19869 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21125 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18162 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28525 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g62402 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene12038.t1 Aspi01Gene12038 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27322.t1 Aspi01Gene27322 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33080.t1 Aspi01Gene33080 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene48128.t1 Aspi01Gene48128 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene70663.t2 OTP84, Aspi01Gene70663 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036583 No alias not classified & original description: CDS=1-1518 0.03 OrthoFinder output from all 47 species
Azfi_s0128.g048776 No alias not classified & original description: CDS=1-1662 0.02 OrthoFinder output from all 47 species
Cba_g76621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g10056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35459 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42997 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23295 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g31000.1 LOC_Os07g31000 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os09g39970.1 LOC_Os09g39970 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g13048 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14105 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18308 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27339 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54488 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02375 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05438 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07380 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07396 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32914 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37426 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09944 MEF22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02838 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16586 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57069 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64529 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g64857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19871 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05062 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31446 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42323 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011577 No alias not classified & original description: CDS=124-1962 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020628 No alias not classified & original description: CDS=1-699 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s1579.g028098 No alias not classified & original description: CDS=1-249 0.03 OrthoFinder output from all 47 species
Sam_g12632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo150748 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo70183 OTP84 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Smo84339 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Spa_g56533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 692 754
IPR002885 Pentatricopeptide_repeat 246 269
IPR002885 Pentatricopeptide_repeat 72 101
IPR002885 Pentatricopeptide_repeat 145 169
IPR002885 Pentatricopeptide_repeat 173 201
IPR002885 Pentatricopeptide_repeat 448 473
IPR002885 Pentatricopeptide_repeat 549 571
IPR002885 Pentatricopeptide_repeat 271 318
IPR002885 Pentatricopeptide_repeat 474 521
IPR002885 Pentatricopeptide_repeat 575 621
IPR002885 Pentatricopeptide_repeat 373 420
No external refs found!