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  5. Dcu_g38525

Dcu_g38525


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g38525

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 OTP86,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT4G30700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g018291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g34933 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05074 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75238 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g40922 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17044 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26847 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01031849001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Gb_23023 OTP84 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
LOC_Os08g38610.1 LOC_Os08g38610 Pentatricopeptide repeat-containing protein At1g26900,... 0.03 OrthoFinder output from all 47 species
Msp_g40822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g20192 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27844 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g43985 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g15681 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g06328 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo115590 REME1 Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species
Smo74388 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo81279 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo82024 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Solyc01g081110.4.1 SLO1, Solyc01g081110 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Spa_g23985 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g24048 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g30545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44799 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g45620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05462 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 756 781
IPR002885 Pentatricopeptide_repeat 655 679
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 478 525
IPR002885 Pentatricopeptide_repeat 579 626
IPR002885 Pentatricopeptide_repeat 175 223
IPR002885 Pentatricopeptide_repeat 74 121
IPR002885 Pentatricopeptide_repeat 276 323
IPR046848 E_motif 798 860
IPR002885 Pentatricopeptide_repeat 680 727
IPR032867 DYW_dom 896 980
No external refs found!