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  5. Dcu_g38580

Dcu_g38580


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g38580

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s03531p00004900 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036795 MEF19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08655 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g10035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24134 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30201 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27592 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36669 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05734 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13395 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001369 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: CDS=172-2610 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011663 No alias not classified & original description: CDS=1-3036 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026593 CRR22 not classified & original description: CDS=1-1842 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031310 No alias not classified & original description: CDS=1-2304 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.02 OrthoFinder output from all 47 species
Azfi_s0095.g043616 No alias not classified & original description: CDS=1-3288 0.03 OrthoFinder output from all 47 species
Azfi_s0166.g054406 No alias not classified & original description: CDS=1-3468 0.03 OrthoFinder output from all 47 species
Azfi_s0269.g061123 No alias ssDNA-binding protein *(OSB) & original description: CDS=107-3214 0.03 OrthoFinder output from all 47 species
Azfi_s0880.g091024 No alias not classified & original description: CDS=182-3622 0.04 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18562 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G011500.1 Ceric.03G011500 not classified & original description: pacid=50571528... 0.04 OrthoFinder output from all 47 species
Ceric.07G000400.1 Ceric.07G000400 not classified & original description: pacid=50627195... 0.03 OrthoFinder output from all 47 species
Ceric.10G047500.1 Ceric.10G047500 not classified & original description: pacid=50612222... 0.02 OrthoFinder output from all 47 species
Ceric.11G015200.1 Ceric.11G015200 not classified & original description: pacid=50595684... 0.05 OrthoFinder output from all 47 species
Ceric.13G049100.1 Ceric.13G049100 not classified & original description: pacid=50635384... 0.03 OrthoFinder output from all 47 species
Ceric.18G000200.1 Ceric.18G000200 not classified & original description: pacid=50622455... 0.04 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.03 OrthoFinder output from all 47 species
Ceric.21G046200.1 Ceric.21G046200 not classified & original description: pacid=50604280... 0.04 OrthoFinder output from all 47 species
Ceric.27G020400.1 Ceric.27G020400 not classified & original description: pacid=50605502... 0.03 OrthoFinder output from all 47 species
Ceric.31G002400.1 Ceric.31G002400 not classified & original description: pacid=50574432... 0.03 OrthoFinder output from all 47 species
Ceric.36G028800.1 Ceric.36G028800 not classified & original description: pacid=50568963... 0.03 OrthoFinder output from all 47 species
Ceric.37G044800.1 Ceric.37G044800 not classified & original description: pacid=50617007... 0.03 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.03 OrthoFinder output from all 47 species
Ceric.39G045800.1 VAC1, ECB2,... not classified & original description: pacid=50583112... 0.02 OrthoFinder output from all 47 species
Dac_g27999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g29399 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06891 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g35118 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12128 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
LOC_Os04g14450.1 LOC_Os04g14450 Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g08837 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18587 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22109 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07842 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14702 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35996 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Msp_g02080 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09823 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g12146 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14968 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15576 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16922 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g20531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g26112 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g30589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31404 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41053 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46073 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06231 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07619 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17317 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20342 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32352 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40748 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g41062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09990 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12406 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09062 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006451 No alias not classified & original description: CDS=1-639 0.03 OrthoFinder output from all 47 species
Sam_g07051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo109721 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo75659 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Solyc01g108180.4.1 Solyc01g108180 RNA editing factor (MEF8). RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Solyc07g045510.4.1 Solyc07g045510 RNA editing factor (MEF7) 0.02 OrthoFinder output from all 47 species
Solyc09g007040.1.1 Solyc09g007040 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10182 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g21770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47167 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05655 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23004 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 49 71
IPR046848 E_motif 189 251
IPR032867 DYW_dom 284 374
IPR002885 Pentatricopeptide_repeat 74 122
No external refs found!