Dcu_g40897 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g40897

Target Alias Description ECC score Gene Family Method Actions
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g003696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g004490 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g004512 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g009826 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g015939 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g017810 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g020024 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g035661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036438 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g041090 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067178 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067896 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g067912 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097033 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102645 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g114947 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g116582 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g24367 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30861 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03803 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04420 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04940 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05103 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05247 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05568 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06338 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06739 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06797 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06803 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07259 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15655 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g17863 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18668 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g19262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19293 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19303 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19798 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26513 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26561 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g28024 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g28029 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g29503 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30417 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30496 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30697 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30736 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31230 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g31336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33170 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33735 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g54506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g54966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55143 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55854 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g57869 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59184 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g62646 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09092 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21473 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0004.g008405 No alias not classified & original description: CDS=233-2125 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025575 CRR2 not classified & original description: CDS=1-1563 0.04 OrthoFinder output from all 47 species
Azfi_s0040.g026593 CRR22 not classified & original description: CDS=1-1842 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036354 CRR22 not classified & original description: CDS=140-2386 0.04 OrthoFinder output from all 47 species
Azfi_s1107.g097662 No alias not classified & original description: CDS=1-2811 0.04 OrthoFinder output from all 47 species
Cba_g04046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g07323 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11319 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20069 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20506 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g20531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20548 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g21419 EMB2744 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g26306 No alias ssDNA-binding protein *(OSB) & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g33342 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g34897 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g37951 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g44878 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g45997 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67245 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g76220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G063700.1 Ceric.10G063700 not classified & original description: pacid=50612924... 0.05 OrthoFinder output from all 47 species
Ceric.18G077100.1 Ceric.18G077100 not classified & original description: pacid=50621411... 0.04 OrthoFinder output from all 47 species
Ceric.30G007900.1 Ceric.30G007900 not classified & original description: pacid=50608292... 0.02 OrthoFinder output from all 47 species
Ceric.37G004200.1 Ceric.37G004200 not classified & original description: pacid=50616137... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g05509 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g09645 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g11806 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08400 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08459 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08493 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g08536 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08758 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10321 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g11166 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g13517 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g18210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g18549 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g20520 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g22981 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26758 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g36357 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36987 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38644 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g38659 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g39483 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g40796 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g40949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40960 CRR2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g43978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g44574 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g44864 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g45756 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g46494 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g46630 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46754 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g47892 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 OrthoFinder output from all 47 species
GSVIVT01030054001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
LOC_Os07g02280.1 LOC_Os07g02280 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Len_g53944 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07383 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g15182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g28060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Msp_g16214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22929 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24622 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g30808 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g03998 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05953 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g12989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15855 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63807 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g65840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018600 CRR22 not classified & original description: CDS=1-1767 0.05 OrthoFinder output from all 47 species
Solyc01g100340.4.1 Solyc01g100340 Pentatricopeptide repeat-containing protein At1g09190... 0.03 OrthoFinder output from all 47 species
Spa_g06160 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21818 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29657 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50395 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20089 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30230 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Zm00001e029819_P003 CRR22, Zm00001e029819 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 223 271
IPR002885 Pentatricopeptide_repeat 323 371
IPR002885 Pentatricopeptide_repeat 122 168
IPR002885 Pentatricopeptide_repeat 22 68
IPR046848 E_motif 438 500
IPR002885 Pentatricopeptide_repeat 400 422
IPR002885 Pentatricopeptide_repeat 197 217
IPR002885 Pentatricopeptide_repeat 298 320
IPR002885 Pentatricopeptide_repeat 94 118
No external refs found!