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  5. Dcu_g41962

Dcu_g41962


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g41962

Target Alias Description ECC score Gene Family Method Actions
AT3G61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g066134 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06731 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14740 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37347 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37584 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09935.t1 CRR21, Aspi01Gene09935 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene31317.t1 CRR28, Aspi01Gene31317 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene48128.t1 Aspi01Gene48128 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53169.t1 Aspi01Gene53169 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000730 No alias not classified & original description: CDS=1-2529 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010319 No alias not classified & original description: CDS=1-1401 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.02 OrthoFinder output from all 47 species
Azfi_s2068.g108965 No alias not classified & original description: CDS=97-387 0.02 OrthoFinder output from all 47 species
Cba_g20235 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20886 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15555 LOI1, MEF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g39002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16902 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005577001 EMB2261 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
LOC_Os03g60200.1 LOC_Os03g60200 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28045 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12137 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17485 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g02471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29069 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g40819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g43620 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03152 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04533 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04545 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002764 No alias not classified & original description: CDS=1-2754 0.03 OrthoFinder output from all 47 species
Solyc09g061340.1.1 OTP84, Solyc09g061340 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Spa_g12249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040855_P003 Zm00001e040855 Pentatricopeptide repeat-containing protein At2g37320... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 237 284
IPR002885 Pentatricopeptide_repeat 438 486
IPR002885 Pentatricopeptide_repeat 640 687
IPR002885 Pentatricopeptide_repeat 337 385
IPR002885 Pentatricopeptide_repeat 136 183
IPR002885 Pentatricopeptide_repeat 540 586
IPR002885 Pentatricopeptide_repeat 211 235
IPR002885 Pentatricopeptide_repeat 513 538
IPR002885 Pentatricopeptide_repeat 110 135
No external refs found!