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  5. Dcu_g42904

Dcu_g42904


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g42904
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00007p00264470 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00007p00264500 evm_27.TU.AmTr_v1... Pectinesterase PPME1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G69940 ATPPME1, PPME1 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G21610 ATPE11, PE11 pectinesterase 11 0.03 OrthoFinder output from all 47 species
AT5G19730 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g046688 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g127146 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16363 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17009 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18531 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19093 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20368 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37035 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38864 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g39532 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25187 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g26631 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07065 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12101 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Als_g12395 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06410 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04456 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07992 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g10592 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11491 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16751 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20021 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g21373 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g21986 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22415 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g26785 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30459 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g56742 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene05795.t1 Aspi01Gene05795 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07325.t1 Aspi01Gene07325 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16818.t1 Aspi01Gene16818 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24083.t2 Aspi01Gene24083 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59342.t1 Aspi01Gene59342 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59344.t1 Aspi01Gene59344 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59346.t1 Aspi01Gene59346 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63093.t1 Aspi01Gene63093 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene71978.t1 Aspi01Gene71978 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010419 No alias pectin methylesterase & original description: CDS=155-1288 0.03 OrthoFinder output from all 47 species
Cba_g11546 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G031400.1 Ceric.05G031400 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.10G069000.1 Ceric.10G069000 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.10G072300.1 Ceric.10G072300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G076400.1 Ceric.10G076400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.26G016900.1 Ceric.26G016900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.29G054600.1 Ceric.29G054600 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.37G019000.1 Ceric.37G019000 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g07534 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g09998 No alias pectin methylesterase & original description: none 0.08 OrthoFinder output from all 47 species
Dac_g11068 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.06 OrthoFinder output from all 47 species
Dac_g17627 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14896 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44261 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g27753 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03343 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05158 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09802 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12393 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12470 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15499 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01014641001 QRT1 Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01015022001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_17798 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_23209 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
Gb_27225 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_32012 QRT1 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Gb_39595 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os01g19440.1 LOC_Os01g19440 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g02282 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Len_g15122 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56779 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09832 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15828 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37206 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40175 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10428610g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.06 OrthoFinder output from all 47 species
MA_18312g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_304854g0010 ATPE11, PE11 pectin methylesterase 0.05 OrthoFinder output from all 47 species
MA_6149868g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
Mp4g01190.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
Msp_g08120 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10586 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39582 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g08012 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08076 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13329 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27443 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30255 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25737 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26500 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31394 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39408 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g39490 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44819 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02205 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g35988 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_24000V3.1 Pp3c12_24000 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14779 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g29894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010091 No alias pectin methylesterase & original description: CDS=1-882 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010557 No alias pectin methylesterase & original description: CDS=267-1394 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015086 No alias pectin methylesterase & original description: CDS=460-1611 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015880 No alias pectin methylesterase & original description: CDS=354-1487 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020122 No alias not classified & original description: CDS=269-877 0.04 OrthoFinder output from all 47 species
Sam_g02095 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26530 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Smo76951 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
Solyc01g109740.3.1 ATPE11, PE11,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc05g053680.1.1 Solyc05g053680 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11007 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11483 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29457 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31270 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49578 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49901 No alias pectin methylesterase & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g49902 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50750 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54581 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09242 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35486 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e029074_P001 Zm00001e029074 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Zm00001e035522_P001 QRT1, Zm00001e035522 pectin methylesterase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 151 431
No external refs found!