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  5. Dcu_g43186

Dcu_g43186 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g43186
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g003717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033661 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036438 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02043 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02534 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09609 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16095 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17428 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25552 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28410 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29706 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g30401 DOT4 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67578 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67581 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g67869 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04710 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20724 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g56780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G043800.1 Ceric.10G043800 not classified & original description: pacid=50613534... 0.04 OrthoFinder output from all 47 species
Ceric.15G056400.1 Ceric.15G056400 not classified & original description: pacid=50639467... 0.04 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.02 OrthoFinder output from all 47 species
Ceric.26G058400.1 VAC1, ECB2,... not classified & original description: pacid=50598871... 0.04 OrthoFinder output from all 47 species
Dac_g05104 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g08356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11806 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g16952 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18287 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23801 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08599 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g16581 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16950 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21476 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38639 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40678 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g43326 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49215 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g06611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16374 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60250.1 LOC_Os01g60250 Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Len_g04697 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g11257 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18041 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g43886 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07412 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g18562 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g22779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28763 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34152 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g41373 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05303 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37474 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12221 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13499 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49579 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06373 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12807 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
Spa_g16702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32763 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g25311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.04 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 587 611
IPR002885 Pentatricopeptide_repeat 487 512
IPR002885 Pentatricopeptide_repeat 184 208
IPR046848 E_motif 630 692
IPR002885 Pentatricopeptide_repeat 210 256
IPR002885 Pentatricopeptide_repeat 108 155
IPR002885 Pentatricopeptide_repeat 310 356
IPR002885 Pentatricopeptide_repeat 412 459
IPR002885 Pentatricopeptide_repeat 513 559
No external refs found!