Dcu_g43193


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g43193
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19723 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36528 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37466 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19046 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26632 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33170 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57869 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08796 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0010.g012416 No alias not classified & original description: CDS=1-1722 0.04 OrthoFinder output from all 47 species
Azfi_s0011.g012535 No alias not classified & original description: CDS=1-2328 0.03 OrthoFinder output from all 47 species
Azfi_s0014.g013569 No alias not classified & original description: CDS=1-2385 0.04 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s0771.g086172 CRR22 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Cba_g04691 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07667 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16998 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20102 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20884 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g47996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G040300.1 CRR22, Ceric.04G040300 not classified & original description: pacid=50630674... 0.04 OrthoFinder output from all 47 species
Ceric.04G079600.1 OTP84, Ceric.04G079600 not classified & original description: pacid=50631214... 0.03 OrthoFinder output from all 47 species
Ceric.11G085300.1 Ceric.11G085300 not classified & original description: pacid=50596385... 0.03 OrthoFinder output from all 47 species
Ceric.13G001600.1 Ceric.13G001600 not classified & original description: pacid=50636694... 0.05 OrthoFinder output from all 47 species
Ceric.13G082600.1 Ceric.13G082600 not classified & original description: pacid=50636923... 0.04 OrthoFinder output from all 47 species
Ceric.16G016300.1 Ceric.16G016300 not classified & original description: pacid=50589149... 0.03 OrthoFinder output from all 47 species
Ceric.21G042400.1 Ceric.21G042400 not classified & original description: pacid=50602832... 0.03 OrthoFinder output from all 47 species
Ceric.23G019700.1 Ceric.23G019700 not classified & original description: pacid=50611424... 0.04 OrthoFinder output from all 47 species
Ceric.27G018200.1 Ceric.27G018200 not classified & original description: pacid=50604999... 0.03 OrthoFinder output from all 47 species
Ceric.28G044700.1 Ceric.28G044700 not classified & original description: pacid=50570014... 0.03 OrthoFinder output from all 47 species
Ceric.30G025700.1 CRR22, Ceric.30G025700 not classified & original description: pacid=50609433... 0.04 OrthoFinder output from all 47 species
Ceric.34G009600.1 Ceric.34G009600 not classified & original description: pacid=50623440... 0.04 OrthoFinder output from all 47 species
Ceric.37G044800.1 Ceric.37G044800 not classified & original description: pacid=50617007... 0.03 OrthoFinder output from all 47 species
Ceric.38G024200.1 Ceric.38G024200 not classified & original description: pacid=50580039... 0.04 OrthoFinder output from all 47 species
Dac_g29379 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35670 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08886 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17220 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26847 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36635 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43222 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
GSVIVT01022208001 No alias Pentatricopeptide repeat-containing protein At4g19191,... 0.04 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.04 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.04 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.04 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.05 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Len_g03390 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23462 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33499 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54178 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12225 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g23499 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38041 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_2991g0010 No alias RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
MA_30949g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_31170g0010 CRR22 RNA editing factor (MEF19) 0.02 OrthoFinder output from all 47 species
MA_34492g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_71104g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.07 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Msp_g02083 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13974 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13682 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32352 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09990 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19928 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06977 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g40990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59338 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004955 No alias not classified & original description: CDS=1-2634 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005517 CRR22 not classified & original description: CDS=1-2004 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014007 No alias not classified & original description: CDS=1-1872 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021987 No alias not classified & original description: CDS=1-1590 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026755 CRR22 not classified & original description: CDS=1-2307 0.03 OrthoFinder output from all 47 species
Smo10066 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo113974 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo98955 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Solyc01g108180.4.1 Solyc01g108180 RNA editing factor (MEF8). RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
Solyc03g006990.1.1 Solyc03g006990 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Solyc05g046280.3.1 Solyc05g046280 RNA editing factor (MEF13) 0.04 OrthoFinder output from all 47 species
Solyc09g090220.3.1 Solyc09g090220 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g05652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30543 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g49732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53135 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13752 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26904 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.04 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
Zm00001e041694_P001 Zm00001e041694 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 380 410
IPR002885 Pentatricopeptide_repeat 150 169
IPR002885 Pentatricopeptide_repeat 655 680
IPR002885 Pentatricopeptide_repeat 784 811
IPR002885 Pentatricopeptide_repeat 353 378
IPR002885 Pentatricopeptide_repeat 857 879
IPR002885 Pentatricopeptide_repeat 482 509
IPR002885 Pentatricopeptide_repeat 178 207
IPR002885 Pentatricopeptide_repeat 580 626
IPR002885 Pentatricopeptide_repeat 74 121
IPR002885 Pentatricopeptide_repeat 276 323
IPR002885 Pentatricopeptide_repeat 907 966
IPR002885 Pentatricopeptide_repeat 681 729
No external refs found!